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Mass Spectrometry/Proteomics Core Laboratory
School of Medicine  :  Mass Spectrometry/Proteomics Core

Workshops

2012; Data reporting in proteomics (under construction)

1. To-down sequencing. fragmentation of peptides (CID, ECD, ETD, IRMM) and denovo sequencing

2..Computer algorithms: Sequest, Peaks, Mascot, X!Tandem, OMMSA

3 FDR and decoy databases

4. Access to data from our server. Viewers

5. Quantification and data reporting: MaxQuant and its viewer/PEAKS

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PAST WORKSHOPS AND COURSES:

2011: REWIEW ON METHODOLOGIES ON PROTEOMICS (November 2011): PDF files will be uploaded by the end of January 2012

2010: INTERNATIONAL COURSE "PROTEOMICS: From Systems Biology to Protein" - CHILE (January 11 - 15)

1. Introduction

2. MALDI TOF and Peptide Massfingerprint

3. ESI - IT - FT ICR - Bottom Up and Top Down sequencing - Search Engines - Data reporting

4. Triple Quadrupoles - Protein quantification: ICAT, iTRAQ, SILAC, free label methods.

5. Protein posttranslational modifications. The phosphoproteome

 

Universidad Austral de Chile and Universidad de Concepción

2009: SPECIAL METHODS IN MASS SPECTROMETRY (March 31-April 14, 2009)

1. Protein-protein interactions by cross linking and mass spectrometry

2. Protein Expression Profiling of Stem Cells with SILAC and Tandem Mass Tag (TMT) Reagents.

3. Analysis of protein dynamics by deuterium exchange in combination with mass spectrometry.

4. Analysis of protein posttranslational modifications.

 

Organized by A. Artigues, M.T. Villar, and E.L. Donaldson

Invited speakers: O. Nadeau, J. Rogers, and D. Miller

 

Kansas University Medical Center and Thermo Finningan

2008: WORKSHOP ON MASS SPECTROMETRY BASED PROTEOMICS (March 17-18, 2008)

Marina Jeyasingham, PhD

Antonio Artigues, PhD